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Cell Structure and Function

Lab 3: Cell Structure and Function
INSTRUCTIONS:

• On your own and without assistance, complete this Lab 3 Answer Sheet electronically and submit it via the Assignments Folder by the date listed in the Course Schedule (under Syllabus).
• To conduct your laboratory exercises, use the Laboratory Manual located under Course Content. Read the introduction and the directions for each exercise/experiment carefully before completing the exercises/experiments and answering the questions.
• Save your Lab 3 Answer Sheet in the following format: LastName_Lab3 (e.g., Smith_Lab3).
• You should submit your document as a Word (.doc or .docx) or Rich Text Format (.rtf) file for best compatibility.

Pre-Lab Questions

1. Identify three major similarities and differences between prokaryotic and eukaryotic cells.

2. Where is the DNA housed in a prokaryotic cell? Where is it housed in a eukaryotic cell?

3. Identify three structures which provide support and protection in a eukaryotic cell.

Experiment 1: Cell Structure and Function
The structure of a cell dictates the majority of its function. You will view a selection of slides that exhibit unique structures that contribute to tissues function.

Materials:
Onion (allium) Root Digital Slide Images

Procedure
1. Examine the onion root tip digital slide images on the following pages. Then, respond to the Post-Lab Questions.
 
Onion Root Tip: 100X

Onion Root Tip: 1000X

Onion Root Tip: 1000X

Onion Root Tip: 100X. Each dark circle indicates a different nucleus.

Onion Root Tip: 1000X

Post-Lab Questions
1. Label each of the arrows in the following slide image: A=Chromosomes, B=Nucleus, C=Cytoplasm, D=Cell Wall

2. What is the difference between the rough and smooth endoplasmic reticulum?

3. Would an animal cell be able to survive without a mitochondria? Why or why not?

4. What could you determine about a specimen if you observed a slide image showing the specimen with a cell wall, but no nucleus or mitochondria?

5. Hypothesize why parts of a plant, such as the leaves, are green, but other parts, such as the roots, are not. Use scientific reasoning to support your hypothesis.

Experiment 2: Osmosis ” Direction and Concentration Gradients
In this experiment, we will investigate the effect of solute concentration on osmosis. A semi-permeable membrane (dialysis tubing) and sucrose will create an osmotic environment similar to that of a cell. This selective permeability allows us to examine the net movement of water across the membrane. You will begin the experiment with a 30% sucrose solution, and perform a set of serial dilutions to create lower concentration solutions. Some of the sucrose concentrations will be membrane permeable; while others will not be permeable (can you determine why this is?).

Materials
(3) 250 mL Beakers
(1) 10 mL Graduated Cylinder
(1) 100 mL Graduated Cylinder
Permanent Marker
*8 Rubber Bands (2 blue, 2 green, 2 red, and 2 yellow)
60 g Sucrose (Sugar) Powder, C12H22O11
4 Waste Beakers (any volume)
*Paper Towels
*Scissors
*Stopwatch
*Water
*(4) 15 cm. Pieces of Dialysis Tubing
*Contains latex. Please handle wearing safety gloves if you have a latex allergy.

*You Must Provide

*Be sure to measure and cut only the length you need for this experiment. Reserve the remainder for later experiments.

Procedure
1. Use the permanent marker to label the three 250 mL beakers as 1, 2, and 3.
2. Cut four strips of dialysis tubing, each 15.0 cm long. Fill Beaker 3 with 100 mL of water and submerge the four pieces of dialysis tubing in the water for at least 10 minutes.
3. After 10 minutes, remove one piece of tubing from the beaker. Use your thumb and pointer finger to rub the tubing between your fingers; this will open the tubing. Close one end of the tubing by folding over 3.0 cm of one end (this will become the bottom). Fold it again and secure with a yellow rubber band (use
4. Tie a knot in the remaining dialysis tubing just above or just below the rubber band. This will create a seal and ensures that solution will not leak out of the tube later in the experiment.
5. To test that no solution can leak out, add a few drops of water to the tubing and look for water leakage. If any water leaks, tighten the rubber band and/or the knot in the tubing. Make sure you pour the water out of the tubing before continuing to the next step.
6. Repeat Steps 4 ” 5 with the three remaining dialysis tubes, using each of the three remaining rubber band colors.
7. Reconstitute the sucrose powder according to the instructions provided on the bottle”s label (your kit contains 60 g of sucrose in a chemical bottle) . This will create 200 mL of a 30% stock sucrose solution.
8. Use Table 2 to create additional sucrose solutions that are 30%, 15% and 3% concentrated, respectively. Use the graduated cylinder and waste beakers to create these solutions. Set these solutions aside.
Table 2: Serial Dilution Instructions
Sucrose Solution mL of Stock Sucrose Solution Needed mL of Water Needed
30% 10 0
15% 5 5
3% 1 9
3% 1 9
9. Pour 150 mL of the remaining stock sucrose solution into Beaker 1.
10. Use some of the remaining stock sucrose solution to create an additional 200 mL of a 3% sucrose solution into Beaker 2.
Hint: Use your knowledge of serial dilutions to create this final, 3% sucrose solution.
11. Measure and pour 10 mL of the remaining 30% sucrose solution into the dialysis bag with the yellow rubber band. Seal the top of this tubing with the remaining yellow rubber band.
12. Measure and pour 10 mL of the 15% sucrose solution in the bag with the red rubber band, and seal the top of the dialysis tubing with the remaining red rubber band. 10 mL of the 3% sucrose solution in the bag with the blue rubber band, and seal the dialysis tubing with the remaining blue rubber band. The final 10 mL of 3% sucrose solution in the bag with the green rubber band. Seal the dialysis tubing with the remaining green rubber band.
13. Verify and record the initial volume of solution from each bag in Table 3.

Figure 8: The dialysis bags are filled with varying concentrations of sucrose solution and placed in one of two beakers.
14. Place the yellow, red, and blue banded tubing in Beaker 2. Place the green banded tubing in Beaker 1 (Figure 8).
15. Hypothesize whether water will flow in or out of each dialysis bag. Include your hypotheses, along with supporting scientific reasoning in the Hypotheses section at the end of this procedure.
16. Allow the bags to sit for one hour. While waiting, pour out the water in the 250 mL beaker that was used to soak the dialysis tubing in Step 1. You will use the beaker in Step 19.
17. After allowing the tubing to sit for one hour, remove them from the beakers.
18. Carefully open the tubing. The top of the tubing may need to be cut off/removed as they tend to dry out over the course of an hour. Measure the solution volumes of each dialysis bag using the 100 mL graduated cylinder. Make sure to empty and dry the cylinder completely between each sample.
19. Record your data in Table 3.
Table 3: Sucrose Concentration vs. Tubing Permeability
Band Color Sucrose % Initial Volume (mL) Final Volume (mL) Net Displacement (mL)
Yellow
Red
Blue
Green
Hypothesis:

Post-Lab Questions
1. For each of the tubing pieces, identify whether the solution inside was hypotonic, hypertonic, or isotonic in comparison to the beaker solution in which it was placed.

2. Which tubing increased the most in volume? Explain why this happened.

3. What do the results of this experiment this tell you about the relative tonicity between the contents of the tubing and the solution in the beaker?
4. What would happen if the tubing with the yellow band was placed in a beaker of distilled water?

5. How are excess salts that accumulate in cells transferred to the blood stream so they can be removed from the body? Be sure to explain how this process works in terms of tonicity.

6. If you wanted water to flow out of a tubing piece filled with a 50% solution, what would the minimum concentration of the beaker solution need to be? Explain your answer using scientific evidence.

7. How is this experiment similar to the way a cell membrane works in the body? How is it different? Be specific with your response.

 

 

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Cell Structure and Function

Cell Structure and Function

What is the advantage of being small and why is outer surface area important to a microorganism, ie. what is the ultimate effect?

Cell Membrane:
What is a phospholipid (ie. fatty acid + glycerol)
What parts are hydrophobic?  Hydrophilic?
What holds the phospholipids in a membrane together?
What are sterols and hopanoids?  How do they differ from phospholipids?  What characteristic do they give cell membranes?

How do archaeal and bacterial cell membranes differ?

What is passive diffusion
What is osmosis
What are the 3 types of facilitator proteins and how do they transport molecules?
What is energy-linked transport?
–what are the 3 types of energy-linked transport?
–explain how they work and what type of energy they involve

Cell Wall:
What is the chemical composition of the bacterial cell wall?
Be able to diagram the cell wall showing the repeating polysaccharide units and location of the peptide cross bridges (not detailed, just M + G and where the crosslinks are)

How are Gram + and Gram – cell walls different?  Include amt. of peptidoglycan, types of peptide crossbridges, teichoic acid, etc.

What is the unique amino acid found in gram negative cell walls?
What are the components of the gram negative outer membrane?
–what is the general structure of LPS?
–what is the toxic portion?

How are cell walls formed:
What is the name of the carrier molecule for the subunits?
What enzyme makes breaks in cell walls to add new subunits?
What is the final step in cell wall synthesis?
What enzyme do we produce to destroy bacterial cell walls and where does it cleave cell walls?
Where does penicillin destroy cell walls?
Is it possible for a bacterial cell to survive without its cell wall?  How and what are these structures called?

How does the archaeal cell wall differ from bacterial cell wall?

DNA:
How is DNA arranged in prokaryotic cells?  Eukaryotic cells? (Is the DNA randomly coiled?)
Can you differentiate between the terms:  chromosome, DNA, gene?

Motility:
What protein makes up prokaryotic flagella?
What are the 3 sections of a flagella
How do flagella move (type of movement and energy source)?
What are the different types of flagellar arrangements
What are runs and tumbles (what direction does the flagellum move for each)?
How does a peritrichous flagellated organism need to do with its flagella to move forward?
What are:  chemotaxis, phototaxis, magnetotaxis?
In what types of organisms are gas vacuoles found and what is their function?
What are the 3 types of gliding motility?  What do all of them have in common?

How are eukaryotic flagella different from prokaryotic flagella? (include where the energy comes from)

What are pili and how might they function?

What are capsules and do they function?

What are granules and inclusion bodies—what types of  molecules are found in them?

Endospores:
What is an endospore?
What are the 4 basic parts of an endospore? And where do they form?
–what are SAPS and calcium dipicolinate

Eukaryotic organelles:
What are mitochondrion and chloroplasts?  What is there structure?
What is the endoplasmic reticulum?  What is the Golgi apparatus?

What is the theory of endosymbiosis and what is the evidence to support it?

Nutrition and Metabolism

What are the 4 major types of macromolecules?  How is a saturated fatty acid different from an unsaturated?  What are the 2 types of nitrogenous bases and what are the bases included in each type?  Differentiate between base, nucleoside and nucleotide.

Why is free energy important to cells?

What are enzymes and what do they do?
What is oxidation/reduction?
What is a coenzyme?
What is the relationship between free energy and reduction potential?

How does ATP function as the energy molecule for a cell?  Why does a cell store glucose for energy instead of ATP?

What are aerobes/anaerobes/facultative anaerobes?

What is a chemoorganotroph?
What occurs in glycolysis?
What is substrate level phosphorylation?
How much ATP and reduced coenzymes are produced in glycolysis?
–what are reduced coenzymes and how do they function?

What is fermentation?  What types of products are formed as a result of fermentation and what is their function for the cell?
How do WE use some of these fermentation products?

Do all organisms use the Embden-Meyerhof pathway?  Explain.
–be able to recognize other names for glucose fermentation

What is the most common cycle used to begin respiration?
–why is this a cycle?
–how much ATP and reduced coenzymes are generated?
–what is the main product of this cycle?
–what is the fate of reduced coenzymes generated during glycolysis
and the citric acid cycle

How is oxidative phosphorylation different from substrate level phosphorylation?

What is the ETS?  What types of proteins are involved in ETS systems? (Be able to recognize general names)
How is the proton gradient generated during ETS?
–what does the proton gradient establish across a cell memb.
–what type of energy is this
What is an ATPase?

Starting with a molecule of glucose, be able to show how a chemoorganotroph growing in aerobic conditions obtains all of its ATP.

What is anaerobic respiration/how does it differ from aerobic (in terms of energy)
–what are types of anaerobic electron acceptors

What is a chemolithotroph?  How is energy produced?
What are some “starting” inorganic sources?  What is the final electron acceptor?
How do these organisms primarily synthesize their ATP?

What is a phototroph?
What do chlorophyll and bacteriochlorophyll do?  What is a reaction center, ie. what happens there?
What are antenna pigments
What is anoxygenic photosynthesis?  What is transferred?  What is formed?  What organisms use this?
What is oxygenic photosynthesis/Z scheme?  What are the 2 photosystems?  What is being transferred?  What is formed?
What are accessory pigments?  Give examples.

What is the Calvin cycle and what does it do?  What organisms use the Calvin cycle? (phototrophs AND chemolithotrophs)
Are there other forms of CO2 fixation?

Be able to differentiate between how the different chemoorganotrophs (3 types) get their energy, how chemolithotrophs get their energy, and how the different phototrophs (2 types) get their energy, ie.  How do they get their ATP?

Responses are currently closed, but you can trackback from your own site.

Cell Structure and Function

Cell Structure and Function

What is the advantage of being small and why is outer surface area important to a microorganism, ie. what is the ultimate effect?

Cell Membrane:
What is a phospholipid (ie. fatty acid + glycerol)
What parts are hydrophobic?  Hydrophilic?
What holds the phospholipids in a membrane together?
What are sterols and hopanoids?  How do they differ from phospholipids?  What characteristic do they give cell membranes?

How do archaeal and bacterial cell membranes differ?

What is passive diffusion
What is osmosis
What are the 3 types of facilitator proteins and how do they transport molecules?
What is energy-linked transport?
–what are the 3 types of energy-linked transport?
–explain how they work and what type of energy they involve

Cell Wall:
What is the chemical composition of the bacterial cell wall?
Be able to diagram the cell wall showing the repeating polysaccharide units and location of the peptide cross bridges (not detailed, just M + G and where the crosslinks are)

How are Gram + and Gram – cell walls different?  Include amt. of peptidoglycan, types of peptide crossbridges, teichoic acid, etc.

What is the unique amino acid found in gram negative cell walls?
What are the components of the gram negative outer membrane?
–what is the general structure of LPS?
–what is the toxic portion?

How are cell walls formed:
What is the name of the carrier molecule for the subunits?
What enzyme makes breaks in cell walls to add new subunits?
What is the final step in cell wall synthesis?
What enzyme do we produce to destroy bacterial cell walls and where does it cleave cell walls?
Where does penicillin destroy cell walls?
Is it possible for a bacterial cell to survive without its cell wall?  How and what are these structures called?

How does the archaeal cell wall differ from bacterial cell wall?

DNA:
How is DNA arranged in prokaryotic cells?  Eukaryotic cells? (Is the DNA randomly coiled?)
Can you differentiate between the terms:  chromosome, DNA, gene?

Motility:
What protein makes up prokaryotic flagella?
What are the 3 sections of a flagella
How do flagella move (type of movement and energy source)?
What are the different types of flagellar arrangements
What are runs and tumbles (what direction does the flagellum move for each)?
How does a peritrichous flagellated organism need to do with its flagella to move forward?
What are:  chemotaxis, phototaxis, magnetotaxis?
In what types of organisms are gas vacuoles found and what is their function?
What are the 3 types of gliding motility?  What do all of them have in common?

How are eukaryotic flagella different from prokaryotic flagella? (include where the energy comes from)

What are pili and how might they function?

What are capsules and do they function?

What are granules and inclusion bodies—what types of  molecules are found in them?

Endospores:
What is an endospore?
What are the 4 basic parts of an endospore? And where do they form?
–what are SAPS and calcium dipicolinate

Eukaryotic organelles:
What are mitochondrion and chloroplasts?  What is there structure?
What is the endoplasmic reticulum?  What is the Golgi apparatus?

What is the theory of endosymbiosis and what is the evidence to support it?

Nutrition and Metabolism

What are the 4 major types of macromolecules?  How is a saturated fatty acid different from an unsaturated?  What are the 2 types of nitrogenous bases and what are the bases included in each type?  Differentiate between base, nucleoside and nucleotide.

Why is free energy important to cells?

What are enzymes and what do they do?
What is oxidation/reduction?
What is a coenzyme?
What is the relationship between free energy and reduction potential?

How does ATP function as the energy molecule for a cell?  Why does a cell store glucose for energy instead of ATP?

What are aerobes/anaerobes/facultative anaerobes?

What is a chemoorganotroph?
What occurs in glycolysis?
What is substrate level phosphorylation?
How much ATP and reduced coenzymes are produced in glycolysis?
–what are reduced coenzymes and how do they function?

What is fermentation?  What types of products are formed as a result of fermentation and what is their function for the cell?
How do WE use some of these fermentation products?

Do all organisms use the Embden-Meyerhof pathway?  Explain.
–be able to recognize other names for glucose fermentation

What is the most common cycle used to begin respiration?
–why is this a cycle?
–how much ATP and reduced coenzymes are generated?
–what is the main product of this cycle?
–what is the fate of reduced coenzymes generated during glycolysis
and the citric acid cycle

How is oxidative phosphorylation different from substrate level phosphorylation?

What is the ETS?  What types of proteins are involved in ETS systems? (Be able to recognize general names)
How is the proton gradient generated during ETS?
–what does the proton gradient establish across a cell memb.
–what type of energy is this
What is an ATPase?

Starting with a molecule of glucose, be able to show how a chemoorganotroph growing in aerobic conditions obtains all of its ATP.

What is anaerobic respiration/how does it differ from aerobic (in terms of energy)
–what are types of anaerobic electron acceptors

What is a chemolithotroph?  How is energy produced?
What are some “starting” inorganic sources?  What is the final electron acceptor?
How do these organisms primarily synthesize their ATP?

What is a phototroph?
What do chlorophyll and bacteriochlorophyll do?  What is a reaction center, ie. what happens there?
What are antenna pigments
What is anoxygenic photosynthesis?  What is transferred?  What is formed?  What organisms use this?
What is oxygenic photosynthesis/Z scheme?  What are the 2 photosystems?  What is being transferred?  What is formed?
What are accessory pigments?  Give examples.

What is the Calvin cycle and what does it do?  What organisms use the Calvin cycle? (phototrophs AND chemolithotrophs)
Are there other forms of CO2 fixation?

Be able to differentiate between how the different chemoorganotrophs (3 types) get their energy, how chemolithotrophs get their energy, and how the different phototrophs (2 types) get their energy, ie.  How do they get their ATP?

Responses are currently closed, but you can trackback from your own site.
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